See the instructions for box 11 of the instructions at
http://www.irs.gov/pub/irs-pdf/i1099r.pdf ( page 13).
As jevd said, the IRS is notified when the RMD actually occurred by way of the 1099-R. The IRS is also notified that an RMD is due for the year by way of the 5498. The 2004 5498, which is used in 2005, is used to notify the IRS that an RMD is due for 2005